MIP EOL Microbes Patch

Bacteria & microbial Eukaryotes to complement NCBI & WoRMS coverage. Hierarchy follows NCBI & Adl et al. 2019.

References

Adl, S. M., et al. 2019. Revisions to the classification, nomenclature, and diversity of eukaryotes. Journal of Eukaryotic Microbiology 66, 4–119. https://doi.org/10.1111/jeu.12691

Boltovskoy, D., ed., 1999. South Atlantic zooplankton. Backhuys Publishers, Leiden.

Burki, F., 2014. The Eukaryotic Tree of Life from a Global Phylogenomic Perspective. Cold Spring Harb Perspect Biol 6, a016147. https://doi.org/10.1101/cshperspect.a016147

Burki Fabien, Kaplan Maia, Tikhonenkov Denis V., Zlatogursky Vasily, Minh Bui Quang, Radaykina Liudmila V., Smirnov Alexey, Mylnikov Alexander P., Keeling Patrick J., 2016. Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista. Proceedings of the Royal Society B: Biological Sciences 283, 20152802. https://doi.org/10.1098/rspb.2015.2802

Caragnano, A., Foetisch, A., Maneveldt, G.W., Millet, L., Liu, L.-C., Lin, S.-M., Rodondi, G., Payri, C.E., 2018. Revision of Corallinaceae (Corallinales, Rhodophyta): recognizing Dawsoniolithon gen. nov., Parvicellularium gen. nov. and Chamberlainoideae subfam. nov. containing Chamberlainium gen. nov. and Pneophyllum. Journal of Phycology 54, 391–409. https://doi.org/10.1111/jpy.12644

Cavalier-Smith, T., 2016. Higher classification and phylogeny of Euglenozoa. European Journal of Protistology 56, 250–276. https://doi.org/10.1016/j.ejop.2016.09.003

Cavalier-Smith, T., Chao, E.E., 2010. Phylogeny and Evolution of Apusomonadida (Protozoa: Apusozoa): New Genera and Species. Protist 161, 549–576. https://doi.org/10.1016/j.protis.2010.04.002

Cavalier-Smith, T., Chao, E.E., Lewis, R., 2018. Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria. Protoplasma 255, 1517–1574. https://doi.org/10.1007/s00709-018-1241-1

Cavalier-Smith, T., Chao, E.E.-Y., 2006. Phylogeny and megasystematics of phagotrophic heterokonts (kingdom Chromista). J. Mol. Evol. 62, 388–420. https://doi.org/10.1007/s00239-004-0353-8

Díaz-Tapia, P., Pasella, M.M., Verbruggen, H., Maggs, C.A., 2019. Morphological evolution and classification of the red algal order Ceramiales inferred using plastid phylogenomics. Molecular Phylogenetics and Evolution 137, 76–85. https://doi.org/10.1016/j.ympev.2019.04.022

Gao, F., Warren, A., Zhang, Q., Gong, J., Miao, M., Sun, P., Xu, D., Huang, J., Yi, Z., Song, W., 2016. The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised Classification of the Phylum Ciliophora (Eukaryota, Alveolata). Scientific Reports 6, 24874. https://doi.org/10.1038/srep24874

Gomaa, F., Lahr, D.J.G., Todorov, M., Li, J., Lara, E., 2017. A contribution to the phylogeny of agglutinating Arcellinida (Amoebozoa) based on SSU rRNA gene sequences. Eur. J. Protistol. 59, 99–107. https://doi.org/10.1016/j.ejop.2017.03.005

Gontcharov, A.A., 2008. Phylogeny and classification of Zygnematophyceae (Streptophyta): current state of affairs. Fottea 8, 87–104. https://doi.org/10.5507/fot.2008.004

Karpov, S.A., López-García, P., Mamkaeva, M.A., Klimov, V.I., Vishnyakov, A.E., Tcvetkova, V.S., Moreira, D., 2018. The Chytrid-like Parasites of Algae Amoeboradix gromovi gen. et sp. nov. and Sanchytrium tribonematis Belong to a New Fungal Lineage. Protist 169, 122–140. https://doi.org/10.1016/j.protis.2017.11.002

Karpov, S.A., Vishnyakov, A.E., Moreira, D., López‐García, P., 2019. The Ultrastructure of Sanchytrium tribonematis (Sanchytriaceae, Fungi incertae sedis) Confirms its Close Relationship to Amoeboradix. Journal of Eukaryotic Microbiology 66, 892–898. https://doi.org/10.1111/jeu.12740

Kosakyan, A., Gomaa, F., Lara, E., Lahr, D.J.G., 2016. Current and future perspectives on the systematics, taxonomy and nomenclature of testate amoebae. European Journal of Protistology, Special issue on Testate Amoebae – a tribute to Ralf Meisterfeld 55, 105–117. https://doi.org/10.1016/j.ejop.2016.02.001

Lado, C., Eliasson, U., 2017. Chapter 7 - Taxonomy and Systematics: Current Knowledge and Approaches on the Taxonomic Treatment of Myxomycetes, in: Stephenson, S.L., Rojas, C. (Eds.), Myxomycetes. Academic Press, pp. 205–251. https://doi.org/10.1016/B978-0-12-805089-7.00007-X

Novozhilov, Y.K., van Hooff, H., Jagers, M., 2014. Trichioides iridescens, a new genus and new species (incertae sedis in Myxomycetes). Mycol Progress 14, 1018. https://doi.org/10.1007/s11557-014-1018-7

Ronikier, A., Halamski, A.T., 2018. Is Myxomycetes (Amoebozoa) a Truly Ambiregnal Group? A Major Issue in Protist Nomenclature. Protist 169, 484–493. https://doi.org/10.1016/j.protis.2018.05.002

Rees, T. (compiler) (2020). The Interim Register of Marine and Nonmarine Genera. Available from http://www.irmng.org at VLIZ.

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Ruhfel, B.R., Gitzendanner, M.A., Soltis, P.S., Soltis, D.E., Burleigh, J.G., 2014. From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evolutionary Biology 14, 23. https://doi.org/10.1186/1471-2148-14-23

Sheikh, S., Thulin, M., Cavender, J.C., Escalante, R., Kawakami, S., Lado, C., Landolt, J.C., Nanjundiah, V., Queller, D.C., Strassmann, J.E., Spiegel, F.W., Stephenson, S.L., Vadell, E.M., Baldauf, S.L., 2018. A New Classification of the Dictyostelids. Protist 169, 1–28. https://doi.org/10.1016/j.protis.2017.11.001

Siemensma, F. J., Microworld - world of amoeboid organisms. World-wide electronic publication, Kortenhoef, the Netherlands. https://www.arcella.nl/

WoRMS Editorial Board (2020). World Register of Marine Species. Available from http://www.marinespecies.org at VLIZ. https://doi.org/10.14284/170

Data and Resources

Additional Info

Field Value
Last Updated September 3, 2020, 15:48 (America/New_York)
Created July 30, 2020, 13:34 (America/New_York)