Trophic guild data for fungi

Data on trophic guilds of fungi derived from the following sources:

Alker AP, Smith GW, Kim K. 2001. Characterization of Aspergillus sydowii (Thom et Church), a fungal pathogen of Caribbean sea fan corals. Hydrobiologia 460:105–11.

Bauer, R., Begerow, D., Sampaio, J.P., Weiβ, M., Oberwinkler, F., 2006. The simple-septate basidiomycetes: a synopsis. Mycol Progress 5, 41–66.

Blackwell, W.H., Letcher, P.M. and Powell, M.J., 2019. Review of Nucleophaga (a primitive,‘cryptomycotan’genus): Summary of named and unnamed species, with discussion of contemporary and historical observations. Phytologia, 101, pp.1-18.

Cali A., Becnel J.J., Takvorian P.M. (2016) Microsporidia. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham.

Canter, H. M., G. H. M. Jaworski. 1982. Some Observation on the Alga Fragilaria crotonensis Kitton and its Parasitism by Two Chytridiaceous Fungi. Annals of Botany 49(4):429–446.

Cavalier-Smith, T., Chao, E.E., Lewis, R., 2018. Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria. Protoplasma 255, 1517–1574.

Chen, X., Lili, L., Zhang, Y., Zhang, J., Ouyang, S., Zhang, Q., Tong, Y., Xu, J. and Zuo, S., 2017. Functional analysis of polygalacturonase gene RsPG2 from Rhizoctonia solani, the pathogen of rice sheath blight. European Journal of Plant Pathology, 149(2), pp.491-502.

Dewel, R. A., J. D. Joines, and J. J. Bond. 1985. A new chytridiomycete parasitizing the tardigrade Milnesium tardigradum. Canad. J. Bot. 63:1525- 1534.

Dwyer, J., Burwell, B., Humber, R.A., Mcleod, C., Fleetwood, M., Johnson, T. 2006. Schizangiella serpentis infection in a Virginia ratsnake (Elaphe obsoleta). Veterinary Pathology. 43(5):819-819.

Embree, R.W. and Indoh, H., 1967. Aquamortierella, a new genus in the Mucorales. Bulletin of the Torrey Botanical Club, pp.464-467.

Gryganskyi, A.P., Humber, R.A., Smith, M.E., Miadlikovska, J., Wu, S., Voigt, K., Walther, G., Anishchenko, I.M. and Vilgalys, R., 2012. Molecular phylogeny of the Entomophthoromycota. Molecular Phylogenetics and Evolution, 65(2), pp.682-694.

Guo, Y., Jud, W., Weikl, F. et al. 2021. Volatile organic compound patterns predict fungal trophic mode and lifestyle. Commun Biol 4:673.

He, M.-Q., Zhao, R.-L., Hyde, K.D., Begerow, D., Kemler, M., Yurkov, A., McKenzie, E.H.C., Raspé, O., Kakishima, M., Sánchez-Ramírez, S., Vellinga, E.C., Halling, R., Papp, V., Zmitrovich, I.V., Buyck, B., Ertz, D., Wijayawardene, N.N., Cui, B.-K., Schoutteten, N., Liu, X.-Z., Li, T.-H., Yao, Y.-J., Zhu, X.-Y., Liu, A.-Q., Li, G.-J., Zhang, M.-Z., Ling, Z.-L., Cao, B., Antonín, V., Boekhout, T., da Silva, B.D.B., De Crop, E., Decock, C., Dima, B., Dutta, A.K., Fell, J.W., Geml, J., Ghobad-Nejhad, M., Giachini, A.J., Gibertoni, T.B., Gorjón, S.P., Haelewaters, D., He, S.-H., Hodkinson, B.P., Horak, E., Hoshino, T., Justo, A., Lim, Y.W., Menolli, N., Mešić, A., Moncalvo, J.-M., Mueller, G.M., Nagy, L.G., Nilsson, R.H., Noordeloos, M., Nuytinck, J., Orihara, T., Ratchadawan, C., Rajchenberg, M., Silva-Filho, A.G.S., Sulzbacher, M.A., Tkalčec, Z., Valenzuela, R., Verbeken, A., Vizzini, A., Wartchow, F., Wei, T.-Z., Weiß, M., Zhao, C.-L., Kirk, P.M., 2019. Notes, outline and divergence times of Basidiomycota. Fungal Diversity 99, 105–367.

Karpov, S.A., Mamkaeva, M.A., Aleoshin, V.V., Nassonova, E., Lilje, O. and Gleason, F.H., 2014. Morphology, phylogeny, and ecology of the aphelids (Aphelidea, Opisthokonta) and proposal for the new superphylum Opisthosporidia. Frontiers in Microbiology, 5, p.112.

Kramer, C. L. (1958). A new genus in the Protomycetaceae. Mycologia, 50(6), 916-926.

Kubanek J, Jensen PR, Keifer PA, Sullards MC, Collins DO, Fenical W. 2003. Seaweed resistance to microbial attack: a targeted chemical defence against marine fungi. Proc. Natl. Acad. Sci. USA 100: 6916–21.

Küpper FC, Maier I, Müller DG, Loiseaux-de Goer S, Guillou L. 2006. Phylogenetic affinities of two eukaryotic pathogens of marine macroalgae, Eurychasma dicksonii (Wright) Magnus and Chytridium polysiphoniae Cohn. Cryptogam. Algol. 27:165–84.

Martel, A., Spitzen-van der Sluijs, A., Blooi, M., Bert, W., Ducatelle, R., Fisher, M.C., Woeltjes, A., Bosman, W., Chiers, K., Bossuyt, F. and Pasmans, F., 2013. Batrachochytrium salamandrivorans sp. nov. causes lethal chytridiomycosis in amphibians. Proceedings of the National Academy of Sciences, 110(38), pp.15325-15329.

Möckel, L., Meusemann, K., Misof, B., Schwartze, V.U., De Fine Licht, H.H., Voigt, K., Stielow, B., de Hoog, S., Beutel, R.G., Buellesbach, J., 2022. Phylogenetic Revision and Patterns of Host Specificity in the Fungal Subphylum Entomophthoromycotina. Microorganisms 10, 256.

Naranjo-Ortiz, M.A., Gabaldón, T., 2019. Fungal evolution: diversity, taxonomy and phylogeny of the Fungi. Biol Rev Camb Philos Soc 94, 2101–2137.

Olive, L. S. 1980. Caulochytrium protostelioides sp. nov., a New Chytrid with Aerial Sporangia. American Journal of Botany 67(4):568-574.

Patterson, D., 1999. The Diversity of Eukaryotes. The American Naturalist 154(supplement):S96-S124.

Powell, M.J. 1984. Fine structure of the unwalled thallus of Rozella polyphagi in its host Polyphagus euglenae. Mycologia 76:1039-1048.

Powell M.J. 1993. Looking at Mycology with a Janus Face: A Glimpse at Chytridiomycetes Active in the Environment. Mycologia 85:1-20.

Powell M.J. 2016. Blastocladiomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham.

Powell M.J. 2016. Chytridiomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham.

Schüßler, A., 2012. The Geosiphon–Nostoc endosymbiosis and its role as a model for arbuscular mycorrhiza research. In Fungal associations (pp. 77-91). Springer, Berlin, Heidelberg.

Sekimoto, S., Rochon, D., Long, J.E. et al. 2011. A multigene phylogeny of Olpidium and its implications for early fungal evolution. BMC Evol Biol 11:331.

Strassert, J.F.H., Wurzbacher, C., Hervé, V. et al. Long rDNA amplicon sequencing of insect-infecting nephridiophagids reveals their affiliation to the Chytridiomycota and a potential to switch between hosts. Sci Rep 11, 396 (2021).

Toome, M., Roberson, R.W., Aime, M.C., 2013. Meredithblackwellia eburnea gen. et sp. nov., Kriegeriaceae fam. nov. and Kriegeriales ord. nov.—toward resolving higher-level classification in Microbotryomycetes. Mycologia 105, 486–495.

Vilela, L.A.F. and Damásio, M.M., 2021. Molecular and cellular changes of arbuscular mycorrhizal fungi-plant interaction in pesticide contamination. Chapter 41 in Handbook of Bioremediation (pp. 649-656). Academic Press.

Walker, G., Dorrell, R., Schlacht, A., Dacks, J., 2011. Eukaryotic systematics: A user’s guide for cell biologists and parasitologists. Parasitology 138, 1638–63.

Wijayawardene, N.N., Hyde, K.D., Rajeshkumar, K.C., Hawksworth, D.L., Madrid, H., Kirk, P.M., Braun, U., Singh, R.V., Crous, P.W., Kukwa, M., Lücking, R., Kurtzman, C.P., Yurkov, A., Haelewaters, D., Aptroot, A., Lumbsch, H.T., Timdal, E., Ertz, D., Etayo, J., Phillips, A.J.L., Groenewald, J.Z., Papizadeh, M., Selbmann, L., Dayarathne, M.C., Weerakoon, G., Jones, E.B.G., Suetrong, S., Tian, Q., Castañeda-Ruiz, R.F., Bahkali, A.H., Pang, K.-L., Tanaka, K., Dai, D.Q., Sakayaroj, J., Hujslová, M., Lombard, L., Shenoy, B.D., Suija, A., Maharachchikumbura, S.S.N., Thambugala, K.M., Wanasinghe, D.N., Sharma, B.O., Gaikwad, S., Pandit, G., Zucconi, L., Onofri, S., Egidi, E., Raja, H.A., Kodsueb, R., Cáceres, M.E.S., Pérez-Ortega, S., Fiuza, P.O., Monteiro, J.S., Vasilyeva, L.N., Shivas, R.G., Prieto, M., Wedin, M., Olariaga, I., Lateef, A.A., Agrawal, Y., Fazeli, S.A.S., Amoozegar, M.A., Zhao, G.Z., Pfliegler, W.P., Sharma, G., Oset, M., Abdel-Wahab, M.A., Takamatsu, S., Bensch, K., de Silva, N.I., De Kesel, A., Karunarathna, A., Boonmee, S., Pfister, D.H., Lu, Y.-Z., Luo, Z.-L., Boonyuen, N., Daranagama, D.A., Senanayake, I.C., Jayasiri, S.C., Samarakoon, M.C., Zeng, X.-Y., Doilom, M., Quijada, L., Rampadarath, S., Heredia, G., Dissanayake, A.J., Jayawardana, R.S., Perera, R.H., Tang, L.Z., Phukhamsakda, C., Hernández-Restrepo, M., Ma, X., Tibpromma, S., Gusmao, L.F.P., Weerahewa, D., Karunarathna, S.C., 2017. Notes for genera: Ascomycota. Fungal Diversity 86, 1–594.

World Health Organization, 2022. WHO fungal priority pathogens list to guide research, development and public health action. Geneva: World Health Organization.